DevLog #2 for PD Biomarkers

Yesterday XGboost wasnt really working so today I switched to logistic regression and it worked perfectly. My ROC AUC and AP are now pretty solid and I can trust the biomarkers that my model extract.

Tomorrow, I’m going to be try to use Random Forest standard instead of XGboost and maybe see if that makes it better. Also, I’m going to focus on documentation readmes all that.

As you can see in the PCA Space plot the controls and the patients are split up pretty well and looks clean.

I’m also looking into using TargetScan with Kegg Pathway Analysis to Biologically validate my top 14 biomarkers.